Browse of TCMCG007C47911 protein

CDS

Accession Number	TCMCG007C47911
gbkey	CDS
Protein Id	XP_009124514.1
Location	join(10268382..10269502,10269871..10270006,10270153..10272372,10272475..10272568,10272730..10273067,10273208..10273921,10274034..10274108,10274250..10274315)
Gene	LOC103849514
GeneID	103849514
Organism	Brassica rapa

Protein

Length	1587aa
Molecule type	protein
Topology	linear
Data_file_division	PLN
dblink	BioProject:PRJNA249065
db_source	XM_009126266.3
Definition	lysine-specific histone demethylase 1 homolog 3 isoform X1 [Brassica rapa]

EGGNOG-MAPPER Annotation

COG_category	Q
Description	SWIRM domain
KEGG_TC	-
KEGG_Module	-
KEGG_Reaction	-
KEGG_rclass	-
BRITE	ko00000        [VIEW IN KEGG] ko00001        [VIEW IN KEGG] ko01000        [VIEW IN KEGG] ko03036        [VIEW IN KEGG]
KEGG_ko	ko:K11450        [VIEW IN KEGG]
EC	-
KEGG_Pathway	ko04714        [VIEW IN KEGG] map04714        [VIEW IN KEGG]
GOs	GO:0005575        [VIEW IN EMBL-EBI] GO:0005622        [VIEW IN EMBL-EBI] GO:0005623        [VIEW IN EMBL-EBI] GO:0005634        [VIEW IN EMBL-EBI] GO:0006325        [VIEW IN EMBL-EBI] GO:0006464        [VIEW IN EMBL-EBI] GO:0006476        [VIEW IN EMBL-EBI] GO:0006479        [VIEW IN EMBL-EBI] GO:0006807        [VIEW IN EMBL-EBI] GO:0006996        [VIEW IN EMBL-EBI] GO:0007275        [VIEW IN EMBL-EBI] GO:0008150        [VIEW IN EMBL-EBI] GO:0008152        [VIEW IN EMBL-EBI] GO:0008213        [VIEW IN EMBL-EBI] GO:0009987        [VIEW IN EMBL-EBI] GO:0016043        [VIEW IN EMBL-EBI] GO:0016569        [VIEW IN EMBL-EBI] GO:0016570        [VIEW IN EMBL-EBI] GO:0016571        [VIEW IN EMBL-EBI] GO:0016575        [VIEW IN EMBL-EBI] GO:0018022        [VIEW IN EMBL-EBI] GO:0018193        [VIEW IN EMBL-EBI] GO:0018205        [VIEW IN EMBL-EBI] GO:0019538        [VIEW IN EMBL-EBI] GO:0022622        [VIEW IN EMBL-EBI] GO:0032259        [VIEW IN EMBL-EBI] GO:0032501        [VIEW IN EMBL-EBI] GO:0032502        [VIEW IN EMBL-EBI] GO:0034968        [VIEW IN EMBL-EBI] GO:0035601        [VIEW IN EMBL-EBI] GO:0036211        [VIEW IN EMBL-EBI] GO:0043170        [VIEW IN EMBL-EBI] GO:0043226        [VIEW IN EMBL-EBI] GO:0043227        [VIEW IN EMBL-EBI] GO:0043229        [VIEW IN EMBL-EBI] GO:0043231        [VIEW IN EMBL-EBI] GO:0043412        [VIEW IN EMBL-EBI] GO:0043414        [VIEW IN EMBL-EBI] GO:0044237        [VIEW IN EMBL-EBI] GO:0044238        [VIEW IN EMBL-EBI] GO:0044260        [VIEW IN EMBL-EBI] GO:0044267        [VIEW IN EMBL-EBI] GO:0044424        [VIEW IN EMBL-EBI] GO:0044464        [VIEW IN EMBL-EBI] GO:0048364        [VIEW IN EMBL-EBI] GO:0048731        [VIEW IN EMBL-EBI] GO:0048856        [VIEW IN EMBL-EBI] GO:0051276        [VIEW IN EMBL-EBI] GO:0051568        [VIEW IN EMBL-EBI] GO:0071704        [VIEW IN EMBL-EBI] GO:0071840        [VIEW IN EMBL-EBI] GO:0098732        [VIEW IN EMBL-EBI] GO:0099402        [VIEW IN EMBL-EBI] GO:1901564        [VIEW IN EMBL-EBI]

Sequence

CDS:   ATGGATGGGAAGGGGAAGAAATGTGGTTCCAAGAAAGAATCTAAGGTTTTTGATTTCGAAGATGATGCTGATGATGATGAACCTATCGGATCTCTCTTAAAGGTTATGAAGCACAAAACTGCTACTAAGAGTAAAGTTGAGACTCAGACTACTGGTAAACAGATGAAGAAACTGACTCATGTACGCAAGGATTCTGAGGATATGGATGACACCTTAGCCAGCTTTAGGAAGAGATTGAAGGGTCACAAGAAAAGGGTTAGGAATGACAAGGATGTTCCTCCGGTTGATACTGTGACTTTGATCCCAAGCCCTGATATGGCTGACGATGCATCTGAGCTTGGCAGGGAAGGTACTGTCAACGAAAAGAGCTTGGATGATATCTATAATACCAAGGTTAAATCGAGTACAAGATCAGTGATATTAGAGAAGGAAGCAGATGCAGATGATAAATCCAAGAGACCGCTGCCAAATGTCGATGTTTATCCTCCTGTTGATAGAAAAGATGTTTCAGTTCTTTCTCCTGATGAGCACATACACCTGGGAGAGCCAGAATCAGAGTCTGGTCATTTCCGAGAGGAAAAAATTGTTATGTGTGTGTGTGGGATCCAATTTAATTTTGAGGATCGTTCCCTTGAGTCTAATTCTGAGGTTGCGATCTGTCAGAAGTGCAAGCGTTCTTCACACCGTGATGCTTCTAACGGAGGTGGTATCCAAGTTAATACTCTCAAAGATGGAACTGCTGAAGCTTCCCCGGTTTCAGTAACTCCCTATGAAGATGAAGATTTCCGAGGTGATGCAGTTTCATTACCTAATTCTGGGAAGCCATCCACCTTGCAACGTCCAGAGCGCATTGCTAGAAAGCGTAAGCATGAAAACATGGTGTATGGAGAAGATATGAATTGGGAGAATGAGCAAGGCTTTCTGGATTGTCAAAGTGACAAGTCCTTTAAAGGAAGCGACAAGTGTGATTTCGGTCCATTTATTTCCAAGGAAATTGAGATTGGTAGAGCAGCTGCGGTGGCAGCTGGCCTTAAAGCCCAGTCGGTTAGTCCGGTGGAGAAGACTATACTTAAAGAGGTATTGAAGCGCAAAGGGAGCCATCAGGAGTACCTACGTTGCAGGAATTCTATCTTAGGTCTGTGGAGTAAAAATGTCAGCCGAATATTACCTGTCACCGAGTGTGTTGTTGGCCTTTCCGAGAGTGAATTTCCTTCAGCTTACCTTATCAGAGAGGTCTATAAGTTTCTTGATCAGAGAGGATATATAAATACTGGGGTTTCATCCGTGAGGGGAAAAGGGTGCCCTTCGATTAATCATGATGATGATCTTTCTCAGGGGAAAAAGCTTGAAGAAAGTTATATGGCTTCTGTTGCATATTCTGAAGGAGATACTTTTATCTTTGGTCAGGTCAAAGCCGTTGAATCGACTAGCGAGGGTAAGAACTGTGCTCTCCAAAATGATGAAACAGAAATTGTAGGATGTGCGACCTCAGCAATGTTGGGATCTACCAGCAAGGCATGCGAGGCAAGCATTATTGAAGATTGCAAACATTCTGTCAGCATAAATGGTTTACCACCAGATGCTAATGCACCCAAGGTCGAAAAGTGTCCGGAAACAGTTTCAGTACCGAAGACTGCTTTGTCTAGCACACCATCCTCTGCAAATTGTAATCAAATTAGCGGAAGAGACTGTGTTCAGTGTGAGGTTGAAGATGAGAAAAAAGTAATAGTAATCGGAGCCGGTCCCGCTGGATTAACAGCAGCACGTCATTTACAGCGCCAAGGTTTTTCTGTCACAGTTCTTGAGGCAAGAAGTAGAGTAGGTGGTCGTGTATTTACAGACCGGTCCTCTCTTTCAGTTCCTGTGGATCTGGGGGCCAGCATAATTACAGGAATTGAGGCTGATGTGCCATCTGAAAGAATGCCAGATCCATCAGCATTGGTCTGTAACCAGTTAGGTCTGGAGTTGAGTGTTTTGCATGGATTCTGTCCCCTTTATGATACTGTAACAGGGGAAAAGGTTCCTCCAGAATTAGATGATGCTTTACAAGGAGAGTTCAACAGTCTGATTGATGATATGGATTTGCTTGTTGAGGAGATAGGCAAGGATAGAGCAAATAAAATGTCGCTCGAGGATGGTCTAGAATATGGCCTCCAGCGGCTGAGGATGCCACATGAGAAGGTGAACATTGAAAGATTCGGGATTGGCAATTCAATAAATGGTTCATTCTCAAGAACAGGCATCACTGGTACCTTTAAGCATGATGGAAGGTTAAAAAAGGATTTTTTGAATCCTTTGGAGCGAAGAGTTATGAATTGGCATTTTGCTCATACAGAGTATGGTTGTGCTGCTGTCCTCAAGGAAGTTTCGCTTTCTAACTGGAATCAAGATGAGTTTTATGGCGGGTTTGGAGGGCCACATGCTATGATTAAAGGTGGTTATAGCAGAGTTGCTGAGTCGCTTGCTGAAGGACTTGATATTCGCTTGAACAATGTAGTTTCTGAGGTATCTTATACCTCTGATGTCTCCGCCATGCATAACAACAAGCATAAAGTCATAGTTAGTACATCAAATGGTGGTGAGTATCTTGGAGATGCTGTTCTGGTTACTGTTCCTCTTGGGTGCTTGAAAGCAGAAACCATTAAGTTTTCACCACCCTTGCCGGACTGGAAATATTCATCAATCAAACAACTTGGTTTTGGAGTTCTAAATAAAGTTGTGTTGGAGTTCTCAAAGGTATTTTGGGATGATAGCTTGGATTATTTTGGGGCAACGGCTGAGGAAACCGATCAAAGAGGTGAATGCTTTATGTTTTGGAATGTCAAAAAAACTGTTGGTGCTCCTGTTCTGATAGCTTTGGTGGTTGGGAAGGCTGCGGTTGACTATAAAGACAAGAGTAAGTCTGAGCATGTGAATCATGCAATGATGGTTCTTCGGAAGCTTTTTGGTGGGGATCTGGTGCCTGATCCTGTTGCTTCGGTAGTTACTGACTGGGGCGCTGATCCTTACAGTTATGGTGCCTACTCATATGTTGCTATTGGTGCCTCTGGTGAAGATTATGATGTACTGGGAAGGCCTGTTCAGAATTGTTTGTTCTTTGCTGGTGAGGCAACATGCAAAGAGCATCCTGACACTGTTGGTGGCGCAATGATGACTGGAGTCCGGGAAGCTGTGCGTATAATCGATATATTAAGAAGTGGAAATGATTATACAGCCGAAATAGAAACACTAGAAAAGGCGCAGAGGAAATCTGTATCTATAAGGGATGAAGTCAGCGACCTAATAAAGAGACTTGAAGTTGTTGAGCTGTCTAATGTGTTGGCTAGACACTCATTGCTTCGGAACATGTTCTTCTCTGCCAAAACAACTGTTGGGCGTTTGCATCTAGCCAAGGAGTTGCTTAACCTACCTGGTGAAACCTTGAAATCCTTTGCTGGTACAAAAGAAGGGCTTACAGTGCTGAACTCTTGGATCCTGGATTCGATGGGGAAGAATGGAACCCAGCTTTTACGTCATTGTGTACATATTCTTGTTCGAGTTACGAGTGATCTCTTTGCCGTGAGGCTCTCAGGCATTGGAAAGACTGTGAAAGAAAAGGTTTGTGCACACACGAGCCGTGATATCCGTGCCATTGCAAGTCAGCTTGTTAATGTGTGGTTGGAACTTTACCGGAAAGAAAAAGCTAATAGGGAAATGAAATCATTGAGACGAACAAACCCTACAAATATCTCTAGAATAAGAAGAAAGCAGAATAGTGAGGATGCAGACAGTAAGGGAAATCTTAGCAATGGCAACGATACGACAACAGATGGAGAGATTGAGGACAACCAGCTACCTATGTCTGAGGAAGAAAAGGCTGTGTTTGCTACAGCTGAGGCTGCTCGTGTAGCAGCTGAAGCAGCTGCAAAGGCATTTTCTGAGGCCTATCAAAGTACTTCATTGCAGCTTCCTAAGATTCCCTCGTTCCATAAATTTGCCAGGCGAGAGCAGTATGCAAAAATGGACGAATCTGATTTTAAGAAAAAGTTTCCAGGCAACGTCTTAGGAAGACAAGATTGTATGTCAGAGATAGACTCTAGGAACTGCAAAGTTCGGGACTGGTATGATTTCCCTGCCTCCTGTCTTGACCCTGACAGTTCAAGGGTTCAGGTCGACAATTGTTCACAGCGTAGCCATTCGAATGAACTTGGATCTCATTCAAAGTTCAGAGAATGTTCTAGAGAGAGTGGGGCTGCGGAAACCAGTGTTTTTACCGGGGCATGGGTTGATACTGGCGGTAGTAGCGATGGTGTCAAGGATTACAATGCAATAGATAGATGGCAATCTCAAGCTGCTGCTGCTGATCCTGAATTTTTCAACCGTGCCTTGCATATGAAGGATGAAGAAGGTTCGATGGCATGTTCGACGGGTCCTCCTAGTTGGAAGCATGACCAACCCGCGAATGAAGGTTCTATGTCACAGGTTACAGTGAATAAAGAGCCACGTAAAAGTCATATCAGGGGTGCAGATCGGTTGAAACAGGGGGTTGTAGATTTTGTTGCATCGTTGCTTATGACCCCATATAGAGCAAAGAAAATTGATAGAGATGTATACAAGTCAATAATGAAGAAGACAGCAACAAAGGTAATGCAGCAAACAACAGACGCGGAGAAAGCCATGGCTGTTCCCCAATTCCTTGACTCAAAGCGGAAAAACAAGATTCGTGACTTTGTGGACAAACAAGTTGACAAGTACATTGCGATGGCTAAAGTTGCAAAACCTTGA

Protein:   MDGKGKKCGSKKESKVFDFEDDADDDEPIGSLLKVMKHKTATKSKVETQTTGKQMKKLTHVRKDSEDMDDTLASFRKRLKGHKKRVRNDKDVPPVDTVTLIPSPDMADDASELGREGTVNEKSLDDIYNTKVKSSTRSVILEKEADADDKSKRPLPNVDVYPPVDRKDVSVLSPDEHIHLGEPESESGHFREEKIVMCVCGIQFNFEDRSLESNSEVAICQKCKRSSHRDASNGGGIQVNTLKDGTAEASPVSVTPYEDEDFRGDAVSLPNSGKPSTLQRPERIARKRKHENMVYGEDMNWENEQGFLDCQSDKSFKGSDKCDFGPFISKEIEIGRAAAVAAGLKAQSVSPVEKTILKEVLKRKGSHQEYLRCRNSILGLWSKNVSRILPVTECVVGLSESEFPSAYLIREVYKFLDQRGYINTGVSSVRGKGCPSINHDDDLSQGKKLEESYMASVAYSEGDTFIFGQVKAVESTSEGKNCALQNDETEIVGCATSAMLGSTSKACEASIIEDCKHSVSINGLPPDANAPKVEKCPETVSVPKTALSSTPSSANCNQISGRDCVQCEVEDEKKVIVIGAGPAGLTAARHLQRQGFSVTVLEARSRVGGRVFTDRSSLSVPVDLGASIITGIEADVPSERMPDPSALVCNQLGLELSVLHGFCPLYDTVTGEKVPPELDDALQGEFNSLIDDMDLLVEEIGKDRANKMSLEDGLEYGLQRLRMPHEKVNIERFGIGNSINGSFSRTGITGTFKHDGRLKKDFLNPLERRVMNWHFAHTEYGCAAVLKEVSLSNWNQDEFYGGFGGPHAMIKGGYSRVAESLAEGLDIRLNNVVSEVSYTSDVSAMHNNKHKVIVSTSNGGEYLGDAVLVTVPLGCLKAETIKFSPPLPDWKYSSIKQLGFGVLNKVVLEFSKVFWDDSLDYFGATAEETDQRGECFMFWNVKKTVGAPVLIALVVGKAAVDYKDKSKSEHVNHAMMVLRKLFGGDLVPDPVASVVTDWGADPYSYGAYSYVAIGASGEDYDVLGRPVQNCLFFAGEATCKEHPDTVGGAMMTGVREAVRIIDILRSGNDYTAEIETLEKAQRKSVSIRDEVSDLIKRLEVVELSNVLARHSLLRNMFFSAKTTVGRLHLAKELLNLPGETLKSFAGTKEGLTVLNSWILDSMGKNGTQLLRHCVHILVRVTSDLFAVRLSGIGKTVKEKVCAHTSRDIRAIASQLVNVWLELYRKEKANREMKSLRRTNPTNISRIRRKQNSEDADSKGNLSNGNDTTTDGEIEDNQLPMSEEEKAVFATAEAARVAAEAAAKAFSEAYQSTSLQLPKIPSFHKFARREQYAKMDESDFKKKFPGNVLGRQDCMSEIDSRNCKVRDWYDFPASCLDPDSSRVQVDNCSQRSHSNELGSHSKFRECSRESGAAETSVFTGAWVDTGGSSDGVKDYNAIDRWQSQAAAADPEFFNRALHMKDEEGSMACSTGPPSWKHDQPANEGSMSQVTVNKEPRKSHIRGADRLKQGVVDFVASLLMTPYRAKKIDRDVYKSIMKKTATKVMQQTTDAEKAMAVPQFLDSKRKNKIRDFVDKQVDKYIAMAKVAKP